Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900958.1_cds_XP_016450976.1_45375
CDS Infomation

[gene=LOC107775732] [db_xref=GeneID:107775732] [protein=phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic] [protein_id=XP_016450976.1] [location=complement(join(26826..27083,27893..28138,28234..28510,29132..29409,29902..30471))] [gbkey=CDS]
Sequence

ATGGCTCTTTCAAGCAGTAGCACTACCAACTCCCTTCTTCCCAACAAATCTCAACTGGTT
CAAAATCAATCCCTTTTACCTTCTCCTCTAAAGAATGTATCTTTCACCACCAACTCAACC
AAACCCGTTAGATTTGTTCAACCAATCTCAGCCATTCATTCCTCTGACTCTTCCAAGAAC
CCCATTGTCTCCGACAAGCCCTCCTCCAAGCCTTCACCGCCGGCGGCCACTGTTACGGCG
GCGGCTACGACGGTGACAAAAACAGAATGGACAGTGGAGAGCTGGAAATCCAAAAAGGCT
CTTCAGTTACCCGAATACCCAAATCAAGAGGAGCTTCAATCTGTTCTTAAGACGATTGAA
GAGTTCCCTCCTATCGTGTTTGCTGGTGAGGCGAGAAGTCTTGAGGAGCGTCTCGGTGAG
GCTGCTATGGGCCGGGCTTTCTTGTTACAAGGAGGTGATTGTGCTGAGAGTTTTAAGGAA
TTTAATGCCAATAATATTAGGGATACTTTTAGAATCCTTCTTCAAATGGGTGCTGTTCTC
ATGTTTGGTGGTCAGATGCCTGTTATCAAGGTTGGAAGGATGGCTGGGCAATTTGCAAAG
CCAAGATCAGATAATTTTGAGGAGAAGAATGGAGTGAAGCTGCCGAGTTACAGGGGAGAC
AACGTGAACGGAGATGCATTTGATGCCAAGTCAAGAACTCCTGACCCTCAGAGGTTGATC
AGGGCGTATTGTCAATCTGCAGCTACTTTGAATCTATTGAGGGCTTTTGCTACAGGAGGA
TATGCTGCCATGCAGAGGATCAACCAATGGAACTTGGATTTCACAGAGCACAGTGAGCAG
GGTGATAGGTATCGTGAACTAGCTAATAGAGTGGATGAGGCCCTTGGTTTCATGGCTGCT
GCTGGACTTACAGTGGATCATCCTATTATGAAAACCACAGAGTTCTGGACTTCTCATGAG
TGCTTACTTTTGCCCTATGAGCAGTCACTAACACGATTGGATTCAACTTCTGGCCTTTAC
TATGATTGTTCCGCCCATTTTATTTGGGTTGGAGAAAGAACTAGGCAGTTGGATGGTGCC
CATGTTGAGTTCTTGAGAGGAGTTGCCAACCCCCTTGGTATTAAGGTGAGTGACAAGATG
GATCCAAGTGCATTGGTCAAGCTCATTGAGATTTTGAACCCTGATAACAAAGCTGGGAGG
ATTACAATAATTACCAGAATGGGAGCAGAGAACATGAGGGTTAAGCTTCCTCATCTTATC
AGAGCAGTCCGAAGAGCAGGGCAAATCGTCACTTGGGTATCTGATCCTATGCATGGGAAT
ACCATCAAAGCTCCTTGCGGTCTAAAAACTCGACCTTTTGATTCCATCAGGGCTGAAGTA
AGAGCATTCTTTGATGTTCATGAGCAAGAAGGAAGCCACCCAGGAGGAGTACACCTGGAG
ATGACAGGCCAAAACGTCACAGAGTGCATTGGTGGATCACGAACTGTGACCTTTGATGAT
CTGAGCTCACGTTACCACACCCACTGTGATCCTAGGCTCAATGCATCTCAATCCCTTGAG
CTCGCCTTCATTATTGCAGAACGCCTAAGAAAGAGGAGGCTTGGATCACAAAACGTATTA
GGTCAATAG

Peptide Sequence

PEP ID

XP_016450976.1
PEP Infomation

PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Nicotiana tabacum]
Sequence

MALSSSSTTNSLLPNKSQLVQNQSLLPSPLKNVSFTTNSTKPVRFVQPISAIHSSDSSKN
PIVSDKPSSKPSPPAATVTAAATTVTKTEWTVESWKSKKALQLPEYPNQEELQSVLKTIE
EFPPIVFAGEARSLEERLGEAAMGRAFLLQGGDCAESFKEFNANNIRDTFRILLQMGAVL
MFGGQMPVIKVGRMAGQFAKPRSDNFEEKNGVKLPSYRGDNVNGDAFDAKSRTPDPQRLI
RAYCQSAATLNLLRAFATGGYAAMQRINQWNLDFTEHSEQGDRYRELANRVDEALGFMAA
AGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHFIWVGERTRQLDGA
HVEFLRGVANPLGIKVSDKMDPSALVKLIEILNPDNKAGRITIITRMGAENMRVKLPHLI
RAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLE
MTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRLGSQNVL
GQ

Transcript Sequence

Gene sequence data has not been registered.